1. Select multiple files containing counts to upload (eg. output of htseq counts)
Note: File names will be used as sample (column) names in output table
This is a simple preprocessing tool to merge individual gene count files (Eg. output count files from htseq)
NOTE: first column must contain the genes. If the gene columns do not match in all files, this tool will not work
Select multiple files to upload, E.g. Input files:
File 1 of 8: CT6_1.txt
File 2 of 8: CT6_2.txt
Note: File names will be used as sample (column) names in output table. You can edit the column names after merging
Output depending on options selected:
A) Without renaming/converting genes (Default)
B) Retrieve gene names (replace), E.g. output file
C) Retrieve gene names (add), E.g. output file
Start your analysis by launching the appropriate application for your data
Your merged counts data will be automatically loaded
Sample names are NOT valid for use in our analysis apps
Edit the column names so they are of the following format:
Last updated October 18, 2018
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Gene Count Merger created by Core Bioinformatics Team of
Center for Genomics and Systems Biology, NYU Abu Dhabi
Copyright (C) 2018, code licensed under GPLv3